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Pumpkin Chocolate Chip Flax Muffins

Delicious, moist, and healthy muffins that taste and smell like pumpkin spice heaven.
Course Breakfast
Prep Time 10 minutes
Cook Time 20 minutes
Total Time 30 minutes
Servings 30 muffins
Calories 115kcal
Author heartysmarty


  • 2 3/4 Cups Whole Wheat Flour
  • 2 teaspoons Baking Powder
  • 1 teaspoon Baking Soda
  • 1 1/2 teaspoons Pumpkin Pie Spice
  • 1/2 teaspoon Salt
  • 15 oz. Pumpkin Puree NOT Pumpkin Pie Filling
  • 1 Cup Applesauce unsweetened
  • 1 Cup Greek or Plain Non-fat yogurt
  • 2 Tablespoons Ground Flaxseed + 6 Tablespoons water
  • 1/2 Cup Honey
  • 1 teaspoon Vanilla extract
  • 3/4 Cup Semi-sweet Mini Chocolate Chips
  • 1 Cup Pecans chopped


  • Preheat the oven to 350 degrees and grease two 9 x 5 x 3-inch bread loaf pans or 2 1/2 muffin tins.
  • In a small bowl, mix all wet ingredients together with a wire whisk or an electric hand mixer until well combined.
  • In a large bowl, whisk together all dry ingredients.
  • Pour the wet ingredients into the dry ingredients and stir to combine. Do not over stir or the bread will come out too flat and dense.
  • Fold in the mini chocolate chips.
  • Bake muffins for 20-30 minutes or bread loaves for 55-65 minutes or until a toothpick inserted in the middle comes out clean.
  • Let the bread sit in the pan for 5 minutes after removing from oven.


Serve warm or store in the fridge for up to one week. These also freeze and reheat very nicely.